Package: scrapbook
Title: Single-cell RNA-seq analyses with scrapper
Version: 1.1.7
Date: 2026-09-11
Authors@R: person('Aaron', 'Lun', role = c('aut', 'cre'), email="infinite.monkeys.with.keyboards@gmail.com", comment=c(ORCID="0000-0002-3564-4813"))
Description: Demonstrates some basic analysis of single-cell RNA-seq
        data with scrapper. This includes quality control,
        normalization, feature selection, various forms of
        dimensionality reduction, clustering into subpopulations, and
        detection of marker genes. It is intended for users who already
        have some familiarity with R and want to get hands-on with some
        basic single-cell analyses.
Depends: AnnotationHub, BiocStyle, bluster, cluster, DropletTestFiles,
        DropletUtils, dynamicTreeCut, edgeR, ggplot2, gridExtra,
        msigdbr, pheatmap, scater, scrapper, scRNAseq, TENxPBMCData,
        MouseGastrulationData
Suggests: rmarkdown, bookdown, knitr
VignetteBuilder: knitr
License: MIT + file LICENSE
URL: https://github.com/libscran/scrapbook
BugReports: https://github.com/libscran/scrapbook/issues
biocViews: Workflow, SingleCellWorkflow
BiocType: book
Config/roxygen2/version: 8.0.0
Encoding: UTF-8
Config/pak/sysreqs: cmake libglpk-dev make libmagick++-dev gsfonts
        libbz2-dev libicu-dev liblzma-dev libpng-dev libuv1-dev
        libxml2-dev libssl-dev libnode-dev xz-utils zlib1g-dev
Repository: https://tempbioc.r-universe.dev
Date/Publication: 2026-09-10 17:28:04 UTC
RemoteUrl: https://github.com/bioc/scrapbook
RemoteRef: HEAD
RemoteSha: 8d330d15f9cc8a340af13a9a95ee2feb21bcc25a
NeedsCompilation: no
Packaged: 2026-10-08 12:00:44 UTC; root
Author: Aaron Lun [aut, cre] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>