Package: OSCA 1.23.0

Alan OCallaghan

OSCA: Orchestrating Single Cell Analysis with Bioconductor

Online book for orchestrating single cell analysis with Bioconductor. Contains plenty of worked examples, theoretical background and some philosophical discussions on the nature of single-cell data analysis.

Authors:Robert Amezquita [aut], Aaron Lun [aut], Stephanie Hicks [aut], Raphael Gottardo [aut], Alan O'Callaghan [cre]

OSCA_1.23.0.tar.gz
OSCA_1.23.0.zip(r-4.7)OSCA_1.23.0.zip(r-4.6)OSCA_1.23.0.zip(r-4.5)
OSCA_1.23.0.tgz(r-4.6-any)OSCA_1.23.0.tgz(r-4.5-any)
OSCA_1.23.0.tar.gz(r-4.7-any)OSCA_1.23.0.tar.gz(r-4.6-any)
OSCA_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
OSCA/json (API)

# Install 'OSCA' in R:
install.packages('OSCA', repos = c('https://tempbioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/orchestratingsinglecellanalysis/issues

On CRAN:

Conda:

immunooncologyworkflowworkflowsinglecellworkflowbookbook-baserna-seqsingle-cellsingle-cell-rna-seq

5.90 score 66 stars 0 exports 37 dependencies

Last updated from:73bbe7a3f5. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE474
linux-devel-x86_64WARNING520
source / vignettesOK610
linux-release-x86_64WARNING435
macos-release-arm64WARNING222
macos-oldrel-arm64WARNING187
windows-develWARNING504
windows-releaseWARNING613
windows-oldrelWARNING463
wasm-releaseOK460

Exports:

Dependencies:base64encBiocGenericsBiocManagerBiocStylebookdownbslibcachemcliCodeDependscodetoolsdigestdir.expiryevaluatefastmapfilelockfontawesomefsgenericsgraphhighrhtmltoolsjquerylibjsonliteknitrlifecyclememoisemimeR6rappdirsrebookrlangrmarkdownsasstinytexxfunXMLyaml

Link to book

Rendered fromstub.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2021-01-31
Started: 2020-10-04