Package: OSCA.intro 1.21.0

Ludwig Geistlinger

OSCA.intro: Introduction to OSCA

Deploys the introduction to the "Orchestrating Single Cell Analysis with Bioconductor" book. This describes how to install R and Bioconductor packages, links out to some resources to learn R, describes how to load datasets into an R session, provides an overview of the SingleCellExperiment class, and performs a "quick start" demonstration for basic single-cell RNA-seq analyses. It is intended for readers with little-to-no computational background who are just getting started with analyses in R.

Authors:Robert Amezquita [aut], Aaron Lun [aut], Stephanie Hicks [aut], Raphael Gottardo [aut], Ludwig Geistlinger [cre]

OSCA.intro_1.21.0.tar.gz
OSCA.intro_1.21.0.zip(r-4.7)OSCA.intro_1.21.0.zip(r-4.6)OSCA.intro_1.21.0.zip(r-4.5)
OSCA.intro_1.21.0.tgz(r-4.6-any)OSCA.intro_1.21.0.tgz(r-4.5-any)
OSCA.intro_1.21.0.tar.gz(r-4.7-any)OSCA.intro_1.21.0.tar.gz(r-4.6-any)
OSCA.intro_1.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
OSCA.intro/json (API)

# Install 'OSCA.intro' in R:
install.packages('OSCA.intro', repos = c('https://tempbioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/osca-source/osca.intro/issues

On CRAN:

Conda:

immunooncologyworkflowworkflowsinglecellworkflow

3.91 score 6 stars 1 scripts 0 exports 202 dependencies

Last updated from:2a2b6c57f4. Checks:1 NOTE, 7 WARNING, 1 ERROR, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE285
linux-devel-x86_64WARNING269
source / vignettesERROR1452
linux-release-x86_64WARNING322
macos-release-arm64WARNING195
macos-oldrel-arm64WARNING219
windows-develWARNING489
windows-releaseWARNING491
windows-oldrelWARNING417
wasm-releaseOK229

Exports:

Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.scealabaster.schemasalabaster.seAnnotationDbiAnnotationFilterAnnotationHubaskpassassortheadbase64encbasiliskbatchelorbeachmatbeeswarmBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakeBiocManagerBiocNeighborsBiocParallelBiocSingularBiocStyleBiocVersionBiostringsbitbit64bitopsblobblusterbookdownbslibcachemCairocellrangercigarillocliclusterCodeDependscodetoolscpp11crayoncurlDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdir.expirydplyrdqrngDropletTestFilesDropletUtilsedgeRensembldbevaluateExperimentHubfarverfastmapfilelockFNNfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggbeeswarmggplot2ggrastrggrepelgluegraphgridExtragtablegypsumh5mreadHDF5Arrayherehighrhmshtmltoolshttrhttr2igraphIRangesirlbaisobandjquerylibjsonlitejsonvalidateKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclelimmalocfitLoomExperimentmagrittrMatrixMatrixGenericsmatrixStatsmemoisemetapodmimeopensslpheatmappillarpkgconfigpngprettyunitsprogressProtGenericspurrrR.methodsS3R.ooR.utilsR6raggrappdirsRColorBrewerRcppRcppAnnoyRcppEigenRcppMLRcppProgressRcppTOMLRCurlreadxlrebookrematchResidualMatrixrestfulrreticulaterhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrprojrootRsamtoolsRSpectraRSQLitersvdrtracklayerRtsneS4ArraysS4VectorsS7sassScaledMatrixscalesscaterscranscRNAseqscuttleSeqinfoSingleCellExperimentsitmosnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsyssystemfontstextshapingtibbletidyrtidyselecttinytexUCSC.utilsutf8uwotV8vctrsviporviridisviridisLitewithrxfunXMLXVectoryamlzellkonverter